MER - Minimal Entity Recognizer
ChEBI - Chemical Entities of Biological Interest
DO - Human Disease Ontology
GO - Gene Ontology
HPO - Human Phenotype Ontology
Influenza, commonly known as "the flu", is an infectious disease caused by an influenza virus. Symptoms can be mild to severe. The most common symptoms include: a high fever, runny nose, sore throat, muscle pains, headache, coughing, and feeling tired ... Acetylcysteine for reducing the oxygen transport and caffeine to stimulate ...
Name of the lexicon to use;
Text to be annotated;
wordnet_nouns hpo chebi_lite doid hp
Output is in BeCalm TSV.
This is a demonstration of
Minimal Named-Entity Recognizer (MER)
. MER is a tool which given any lexicon and any input text returns the list of terms recognized in the text, including their exact location (annotations). MER is better described in:
Couto, F. M., Campos, L., & Lamurias, A.
MER: a minimal named-entity recognition tagger and annotation server
. Proceedings of the BioCreative, 2017.
This project was developed at LaSIGE, Faculdade de Ciências, Universidade de Lisboa, Portugal by